BridgeProp Class Reference

Inheritance diagram for BridgeProp:

Public Member Functions
	BridgeProp (const std::string &n)
	constructor
	~BridgeProp ()
	destructor
Couple *	newCouple (Glossary *opt) const
	return a Hand with this property
void	clear ()
	set default values
void	read (Glossary &)
	set from a Glossary
void	complete (SimulProp const *, PropertyList *)
	compute values derived from the parameters
Property *	clone () const
	return a carbon copy of object
void	write_data (std::ostream &) const
	write all values
Public Member Functions inherited from CoupleProp
	CoupleProp (const std::string &n)
	constructor
	~CoupleProp ()
	destructor
std::string	kind () const
	identifies the property
Space const *	confineSpace () const
	return confining Space
Public Member Functions inherited from Property
	Property (const std::string &n, const int index=-1)
	constructor must provide a name
virtual	~Property ()
	destructor
std::string	name () const
	return identifier for instantiation
void	name (const std::string &n)
	change name
bool	is_named (const std::string &n)
	true if 'name' matches
int	index () const
	index, unique among all Property of similar kind()
void	index (int x)
	set index in the array of Properties
bool	modified () const
	true if at least one value is different than its default setting
void	readString (std::string &, char stamp)
	set from a string, return number of values assigned More...
void	readFile (const char file[])
	set from a string, return number of values assigned
void	write_diff (std::ostream &, const Property *ref) const
	write only values that differ from the ones specified in ref
void	write_diff (std::ostream &, bool prune) const
	if ( prune == true ), write values that differ from the default values
void	write (std::ostream &, bool prune=false) const
	write header + data More...

Public Attributes
Specificity	specificity
	Specificity of binding to a pair a Fiber. More...
bool	trans_activated
	if ( trans_activated == 1 ), hand2 is active only if hand1 is bound
Public Attributes inherited from CoupleProp
std::string	hand1
	name of first Hand in Couple
std::string	hand2
	name of second Hand in Couple
real	stiffness
	stiffness of link between the two Hands while linking
real	length
	resting length of the link
real	diffusion
	diffusion coefficient while unattached
bool	fast_diffusion
	if true, an algorithm is used that assumes uniform concentration of diffusing Couple
bool	stiff
	prevent both Hands from binding at the same position on a Fiber (default=true)
Confinement	confine
	Confinement can be none, inside (default) or surface.
real	confine_stiff
	Unused Parameter: confinement stiffness (this is specified as confine[1])
std::string	confine_space
	name of space for confinement (this is specified as confine[2])
std::string	activity
	specialization More...

Friends
class	Bridge

Additional Inherited Members
Public Types inherited from CoupleProp
enum	Specificity { BIND_ALWAYS, BIND_ANTIPARALLEL, BIND_PARALLEL }
	indicates a specificity for crosslinking two fibers More...
Static Public Member Functions inherited from Property
template<typename C >
static void	write_param (std::ostream &os, std::string const &name, C const &c)
	formatted output of one parameter
template<typename C >
static void	write_param (std::ostream &os, std::string const &name, C const *c, int cnt)
	formatted output of one parameter
template<typename C , typename D >
static void	write_param (std::ostream &os, std::string const &name, C const &c, D const &d)
	formatted output of one parameter
template<typename C , typename D , typename E >
static void	write_param (std::ostream &os, std::string const &name, C const &c, D const &d, E const &e)
	formatted output of one parameter
template<typename C , typename D , typename E , typename F >
static void	write_param (std::ostream &os, std::string const &name, C const &c, D const &d, E const &e, F const &f)
	formatted output of one parameter
Protected Attributes inherited from CoupleProp
real	diffusion_dt
HandProp *	hand_prop1
HandProp *	hand_prop2
Space const *	confine_space_ptr